species:   Vamal
pid:       PID2007
parent:    PC-122130_5
paralog:   a
locus:     JUIY01001394.1:716-936
matures:   ['UAGGCGUAAACUCUAUUCGU', 'GACUAGAAUUUAUAGCUAAA']
srr:       SRR9035426
genome:    /Users/jax/+Genomes/Fungal_genomes/Vamal.GCA_000818155.1_ASM81815v1_genomic.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Guo2021-na.SRR9035426.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Guo2021-na.SRR9035426.cram JUIY01001394.1:716-936

0 out of bounds
7 alignments
7 proper strand
6 stranded perfect matches

                                                                                      **********************                                                                                           **********************
UAUUUCGUACUAUAAAUCUUAAAGGUUAUAAAGAUAGAAAAGUGCCCCGAAUAGCCUAAUAAAGAGUAUAAAGUAACGAAGUUCCUGCUAGGCGUAAACUCUAUUCGUCUCGUAUAAUCUACUUAGAUAAUUAAAGCAGAAUUAUAACUAUAAAUAGCUUAGGCUACCCUAGAUAAUAUAAUCGAGAUUAUCGAGGAUAACGACUAGAAUUUAUAGCUAAA
.((((((((((.((..((((..(((((((.....................)))))))....))))...)).))).)))))))........((((((((.((((.((((((((.(((((((......((((((.......)))))).........((((....)))).....(((......))).)))))))))))....)))).)))).))))).)))...
----------------------------------------------------------------------------------------UAGGCGUAAACUCUAUUCGU----------------------------------------------------------------------------------------------------------------- l=20 a=3 c
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GACUAGAAUUUAUAGCUAAA l=20 a=0 c*
----------------------------------------------------------------------------------------UAGGCGUAAACUCUAUUCGU----------------------------------------------------------------------------------------------------------------- l=20 a=3 ma
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GACUAGAAUUUAUAGCUAAA l=20 a=0 ma*

--------------------------------------------------------------------------------------------CGUAAACUCUAUUCGUCUCGUA----------------------------------------------------------------------------------------------------------- l=22 a=1 
----------------------------------------------------------------------------------------UAGGCGUAAACUCUAUUCG------------------------------------------------------------------------------------------------------------------ l=19 a=1 
----------------------------------------------------------------------------------------UAGGCGUAAACUCUAUUCGU----------------------------------------------------------------------------------------------------------------- l=20 a=3 (c,ma)
----------------------------------------------------------------------------------------UAGGCGUAAACUCUAUUCGUu---------------------------------------------------------------------------------------------------------------- l=21 a=1 
-------------------------------------------------------------------------UAACGAAGUUCCUGCUAGGCG------------------------------------------------------------------------------------------------------------------------------- l=21 a=1 

mb-01011
ax-1011011
ku-01
ss-111111101110
fn-011
